Package index

All functions

bycatch-package bycatch

The 'bycatch' package.

extract_log_lik_for_loo()

Extract log-likelihood matrix for loo, removing NA observations

fit_bycatch()

fit_bycatch - Unified version with coverage rate parameters

get_expanded()

get_expanded is a helper function to return a matrix of posterior predictive values for unobserved bycatch

get_fitted()

get_fitted returns df of observed bycatch estimates (lambda of Poisson), accounting for effort but not accounting for observer coverage

get_stream_summary()

get_stream_summary provides a summary of monitoring coverage and bycatch by stream

get_total()

get_total is a helper function to return a matrix of total estimated bycatch

plot_expanded()

plot_expanded is makes plots of the expanded bycatch estimates, accounting for observer coverage and effort

plot_fitted()

plot_fitted makes plots bycatch estimates (lambda of Poisson), accounting for effort but not accounting for observer coverage